NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM925231 Query DataSets for GSM925231
Status Public on May 02, 2012
Title baseline_volunteer9
Sample type RNA
 
Source name baseline_volunteer9
Organism Homo sapiens
Characteristics tissue: blood
Treatment protocol globin and DNAse treatment
Growth protocol RNA total from blood
Extracted molecule total RNA
Extraction protocol PAXgene kit
Label biotin
Label protocol IVT labeling kit
 
Hybridization protocol IVT kit (affymetrix)
Scan protocol GCOS
Description Human Genome Plus
Data processing Gene expression values were obtained using the three-step Robust Multi-array Average (RMA) pre-processing method (Irizarry et al., 2003), implemented in the Affymetrix Inc. package from R/Bioconductor. We applied the ComBat method prior to analysis for adjusting data for undesirable experimental variation (or batch effect) caused by different days in which the microarrays were processed. ComBat implements an empirical Bayes approach, that is commonly used in microarray analyses due to its ability to robustly handle high-dimensional data when sample sizes are small (Johnson et al, 2007).
 
Submission date Apr 30, 2012
Last update date May 02, 2012
Contact name Renata Pellegrino
E-mail(s) renata.pellegrino@gmail.com
Phone 2154327670
Organization name UNIFESP
Street address Rua NApoleao de Barros 925
City Sao Paulo
ZIP/Postal code 04024-002
Country Brazil
 
Platform ID GPL570
Series (1)
GSE37667 The peripheral genome-wide gene expression profiles in humans after prolonged wakefulness and sleep recovery

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 6.724026503
1053_at 6.293641427
117_at 9.213028099
121_at 6.985195316
1255_g_at 2.308134896
1294_at 8.484905978
1316_at 5.728895598
1320_at 2.918824677
1405_i_at 11.82788811
1431_at 2.637801845
1438_at 4.689581374
1487_at 7.457327984
1494_f_at 4.974269303
1552256_a_at 5.808882949
1552257_a_at 6.903333257
1552258_at 4.638872357
1552261_at 2.870269117
1552263_at 8.127227556
1552264_a_at 8.433980181
1552266_at 2.168188463

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM925231_D_rebote.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap