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Sample GSM923588 Query DataSets for GSM923588
Status Public on Apr 30, 2012
Title PSU_ChipSeq_G1E-ER4_GATA2_(SC-9008)
Sample type SRA
Source name G1E-ER4
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
antibody: GATA2_(SC-9008)
antibody antibodydescription: Rabbit polyclonal antibody raised against amino acids 120-235 of GATA-2 of human origin. Antibody Target: GATA2
antibody targetdescription: The GATA family of transcription factors share a conserved zinc finger DNA-binding domain and are capable of binding the WGATAR consensus sequence. GATA1 is erythroid-specific and is essential for normal erythropeisis. By comparison, GATA2 is expressed at high levels in hematopoeitic progenitors, including early erythroid cells, but is strong repressed during erythroblast differentiaion.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-9008
age: E0
age description: Embryonic day 0 (stem cell)
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001921
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Treatment protocol diffProtD_24hr
Growth protocol G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
SRA SRX145068
BioSample SAMN00990273
Named Annotation GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputRepSignalRep1.bigWig
Named Annotation GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputRepSignalRep2.bigWig
Named Annotation GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputPk.broadPeak.gz 198.8 Kb (ftp)(http) BROADPEAK
GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputRepPeaksRep1.broadPeak.gz 136.3 Kb (ftp)(http) BROADPEAK
GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputRepPeaksRep2.broadPeak.gz 50.0 Kb (ftp)(http) BROADPEAK
GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputRepSignalRep1.bigWig 877.9 Mb (ftp)(http) BIGWIG
GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputRepSignalRep2.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM923588_mm9_wgEncodePsuTfbsG1eer4e2Gata2sc9008ME0S129InputSig.bigWig 1.9 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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