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Sample GSM923584 Query DataSets for GSM923584
Status Public on Apr 30, 2012
Title PSU_ChipSeq_CH12_PAX5_(N-15)
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: PAX5_(N-15)
antibody antibodydescription: rabbit polyclonal antibody; epitope is a synthetic peptide: MDLEKNYPTPRTSRT, corresponding to amino acids 1-15 of Human PAX5, cross-reacts with human and mouse PAX5. Antibody Target: PAX5
antibody targetdescription: The PAX5 gene is a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA binding motif, known as the paired box. The PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. The PAX5 gene encodes the B cell lineage specific activator protein (BSAP) that is expressed at early, but not late stages of B cell differentiation.
antibody vendorname: Abcam
antibody vendorid: ab12000
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001923
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX145064
BioSample SAMN00990269
Named Annotation GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputRepSignalRep1.bigWig
Named Annotation GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputRepSignalRep2.bigWig
Named Annotation GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputSig.bigWig

Supplementary file Size Download File type/resource
GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputPk.broadPeak.gz 15.4 Kb (ftp)(http) BROADPEAK
GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputRepPeaksRep1.broadPeak.gz 22.3 Kb (ftp)(http) BROADPEAK
GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputRepPeaksRep2.broadPeak.gz 13.0 Kb (ftp)(http) BROADPEAK
GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputRepSignalRep1.bigWig 2.1 Gb (ftp)(http) BIGWIG
GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputRepSignalRep2.bigWig 4.2 Gb (ftp)(http) BIGWIG
GSM923584_mm9_wgEncodePsuTfbsCh12Pax5cFImmortal2a4bInputSig.bigWig 4.5 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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