|
| Status |
Public on Apr 30, 2012 |
| Title |
PSU_ChipSeq_MEL_TAL1_(SC-12984) |
| Sample type |
SRA |
| |
|
| Source name |
MEL
|
| Organism |
Mus musculus |
| Characteristics |
lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: U
antibody: TAL1_(SC-12984)
antibody antibodydescription: goat polyclonal antibody; epitope mapping at the C-terminus of TAL1 of human origin, recommended for detection of TAL1 of mouse, rat and human origin. Antibody Target: TAL1
antibody targetdescription: TAL1 (also designated SCL) is a serine phosphoprotein and basic helix-loop-helix transcription factor known to regulate embryonic hematopoiesis.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-12984
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001929
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
| Biomaterial provider |
Weissman lab
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
|
| |
|
| Submission date |
Apr 27, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (3) |
| GSE36029 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX145058 |
| BioSample |
SAMN00990263 |
| Named Annotation |
GSM923578_mm9_wgEncodePsuTfbsMelTal1UImmortalC57bl6InputRepSignalRep1.bigWig |
| Named Annotation |
GSM923578_mm9_wgEncodePsuTfbsMelTal1UImmortalC57bl6InputRepSignalRep2.bigWig |
| Named Annotation |
GSM923578_mm9_wgEncodePsuTfbsMelTal1UImmortalC57bl6InputSig.bigWig |
