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Sample GSM923577 Query DataSets for GSM923577
Status Public on Apr 30, 2012
Title PSU_ChipSeq_MEL_Pol2-4H8
Sample type SRA
 
Source name MEL
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: U
antibody: Pol2-4H8
antibody antibodydescription: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL24H8
antibody targetdescription: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes
antibody vendorname: Abcam
antibody vendorid: ab5408
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001929
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
 
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX145057
BioSample SAMN00990262
Named Annotation GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep1.bigWig
Named Annotation GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep2.bigWig
Named Annotation GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputPk.broadPeak.gz 331.8 Kb (ftp)(http) BROADPEAK
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepPeaksRep1.broadPeak.gz 738.6 Kb (ftp)(http) BROADPEAK
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepPeaksRep2.broadPeak.gz 119.3 Kb (ftp)(http) BROADPEAK
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep1.bigWig 2.3 Gb (ftp)(http) BIGWIG
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep2.bigWig 2.2 Gb (ftp)(http) BIGWIG
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputSig.bigWig 4.0 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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