GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM923568 Query DataSets for GSM923568
Status Public on Apr 30, 2012
Title PSU_ChipSeq_CH12_CTCF
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001923
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX145048
BioSample SAMN00990253
Named Annotation GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep1.bigWig
Named Annotation GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep2.bigWig
Named Annotation GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputSig.bigWig

Supplementary file Size Download File type/resource
GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputPk.broadPeak.gz 448.6 Kb (ftp)(http) BROADPEAK
GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepPeaksRep1.broadPeak.gz 317.4 Kb (ftp)(http) BROADPEAK
GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepPeaksRep2.broadPeak.gz 359.9 Kb (ftp)(http) BROADPEAK
GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep1.bigWig 2.5 Gb (ftp)(http) BIGWIG
GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep2.bigWig 3.1 Gb (ftp)(http) BIGWIG
GSM923568_mm9_wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputSig.bigWig 3.9 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap