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Sample GSM923453 Query DataSets for GSM923453
Status Public on Apr 27, 2012
Title UW_RepliSeq_BG02ES
Sample type SRA
Source name BG02ES
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: BG02ES
cell organism: human
cell description: embryonic stem cell (hESC), BG02, treatment: H9 conditioned medium
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
labexpid: DS9027
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider BresaGen, Inc.
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144824
BioSample SAMN00990243
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esG1bPctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esG2PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS1PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS2PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS3PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS4PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esSumSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esWaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923453_hg19_wgEncodeUwRepliSeqBg02esG1bPctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esG2PctSignalRep1.bigWig 8.7 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esPkRep1.bed.gz 40.2 Kb (ftp)(http) BED
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS1PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS2PctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS3PctSignalRep1.bigWig 8.6 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS4PctSignalRep1.bigWig 8.6 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esSumSignalRep1.bigWig 12.6 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esValleysRep1.bed.gz 40.1 Kb (ftp)(http) BED
GSM923453_hg19_wgEncodeUwRepliSeqBg02esWaveSignalRep1.bigWig 9.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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