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Sample GSM923449 Query DataSets for GSM923449
Status Public on Apr 27, 2012
Title UW_RepliSeq_HeLa-S3
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: HeLa-S3
cell organism: human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
labexpid: DS9941
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider ATCC
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144820
BioSample SAMN00990239
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3G1bPctSignalRep1.bigWig
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3G2PctSignalRep1.bigWig
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3S1PctSignalRep1.bigWig
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3S2PctSignalRep1.bigWig
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3S3PctSignalRep1.bigWig
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3S4PctSignalRep1.bigWig
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3SumSignalRep1.bigWig
Named Annotation GSM923449_hg19_wgEncodeUwRepliSeqHelas3WaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923449_hg19_wgEncodeUwRepliSeqHelas3G1bPctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923449_hg19_wgEncodeUwRepliSeqHelas3G2PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923449_hg19_wgEncodeUwRepliSeqHelas3PkRep1.bed.gz 38.3 Kb (ftp)(http) BED
GSM923449_hg19_wgEncodeUwRepliSeqHelas3S1PctSignalRep1.bigWig 7.8 Mb (ftp)(http) BIGWIG
GSM923449_hg19_wgEncodeUwRepliSeqHelas3S2PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923449_hg19_wgEncodeUwRepliSeqHelas3S3PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923449_hg19_wgEncodeUwRepliSeqHelas3S4PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923449_hg19_wgEncodeUwRepliSeqHelas3SumSignalRep1.bigWig 12.5 Mb (ftp)(http) BIGWIG
GSM923449_hg19_wgEncodeUwRepliSeqHelas3ValleysRep1.bed.gz 38.1 Kb (ftp)(http) BED
GSM923449_hg19_wgEncodeUwRepliSeqHelas3WaveSignalRep1.bigWig 9.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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