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Sample GSM923448 Query DataSets for GSM923448
Status Public on Apr 27, 2012
Title UW_RepliSeq_K562
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
labexpid: DS8837
phase: G1
phase description: Flow sorted, G1 phase corresponds to the first DNA content window
replicate: 1
Biomaterial provider ATCC
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144819
BioSample SAMN00990238
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562G1PctSignalRep1.bigWig
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562G2PctSignalRep1.bigWig
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562S1PctSignalRep1.bigWig
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562S2PctSignalRep1.bigWig
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562S3PctSignalRep1.bigWig
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562S4PctSignalRep1.bigWig
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562SumSignalRep1.bigWig
Named Annotation GSM923448_hg19_wgEncodeUwRepliSeqK562WaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923448_hg19_wgEncodeUwRepliSeqK562G1PctSignalRep1.bigWig 8.6 Mb (ftp)(http) BIGWIG
GSM923448_hg19_wgEncodeUwRepliSeqK562G2PctSignalRep1.bigWig 8.6 Mb (ftp)(http) BIGWIG
GSM923448_hg19_wgEncodeUwRepliSeqK562PkRep1.bed.gz 41.7 Kb (ftp)(http) BED
GSM923448_hg19_wgEncodeUwRepliSeqK562S1PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923448_hg19_wgEncodeUwRepliSeqK562S2PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923448_hg19_wgEncodeUwRepliSeqK562S3PctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923448_hg19_wgEncodeUwRepliSeqK562S4PctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923448_hg19_wgEncodeUwRepliSeqK562SumSignalRep1.bigWig 12.4 Mb (ftp)(http) BIGWIG
GSM923448_hg19_wgEncodeUwRepliSeqK562ValleysRep1.bed.gz 41.7 Kb (ftp)(http) BED
GSM923448_hg19_wgEncodeUwRepliSeqK562WaveSignalRep1.bigWig 9.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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