GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM923447 Query DataSets for GSM923447
Status Public on Apr 27, 2012
Title UW_RepliSeq_IMR90
Sample type SRA
Source name IMR90
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: IMR90
cell organism: human
cell description: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: endoderm
cell sex: F
labexpid: DS17625
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider ATCC
Growth protocol IMR90_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144818
BioSample SAMN00990237
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90G1bPctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90G2PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S1PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S2PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S3PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S4PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90SumSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90WaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923447_hg19_wgEncodeUwRepliSeqImr90G1bPctSignalRep1.bigWig 8.1 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90G2PctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90PkRep1.bed.gz 31.9 Kb (ftp)(http) BED
GSM923447_hg19_wgEncodeUwRepliSeqImr90S1PctSignalRep1.bigWig 7.4 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90S2PctSignalRep1.bigWig 7.9 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90S3PctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90S4PctSignalRep1.bigWig 7.8 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90SumSignalRep1.bigWig 12.3 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90ValleysRep1.bed.gz 31.7 Kb (ftp)(http) BED
GSM923447_hg19_wgEncodeUwRepliSeqImr90WaveSignalRep1.bigWig 9.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap