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Sample GSM923445 Query DataSets for GSM923445
Status Public on Apr 27, 2012
Title UW_RepliSeq_NHEK
Sample type SRA
Source name NHEK
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: NHEK
cell organism: human
cell description: epidermal keratinocytes
cell karyotype: normal
cell lineage: ectoderm
cell sex: F
labexpid: DS9947
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider Lonza
Growth protocol Keratinocyte_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144816
BioSample SAMN00990235
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekG1bPctSignalRep1.bigWig
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekG2PctSignalRep1.bigWig
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekS1PctSignalRep1.bigWig
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekS2PctSignalRep1.bigWig
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekS3PctSignalRep1.bigWig
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekS4PctSignalRep1.bigWig
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekSumSignalRep1.bigWig
Named Annotation GSM923445_hg19_wgEncodeUwRepliSeqNhekWaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923445_hg19_wgEncodeUwRepliSeqNhekG1bPctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923445_hg19_wgEncodeUwRepliSeqNhekG2PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923445_hg19_wgEncodeUwRepliSeqNhekPkRep1.bed.gz 44.5 Kb (ftp)(http) BED
GSM923445_hg19_wgEncodeUwRepliSeqNhekS1PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923445_hg19_wgEncodeUwRepliSeqNhekS2PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923445_hg19_wgEncodeUwRepliSeqNhekS3PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923445_hg19_wgEncodeUwRepliSeqNhekS4PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923445_hg19_wgEncodeUwRepliSeqNhekSumSignalRep1.bigWig 12.6 Mb (ftp)(http) BIGWIG
GSM923445_hg19_wgEncodeUwRepliSeqNhekValleysRep1.bed.gz 44.4 Kb (ftp)(http) BED
GSM923445_hg19_wgEncodeUwRepliSeqNhekWaveSignalRep1.bigWig 9.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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