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Sample GSM923442 Query DataSets for GSM923442
Status Public on Apr 27, 2012
Title UW_RepliSeq_MCF-7
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
labexpid: DS9795
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider ATCC
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144813
BioSample SAMN00990232
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7G1bPctSignalRep1.bigWig
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7G2PctSignalRep1.bigWig
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7S1PctSignalRep1.bigWig
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7S2PctSignalRep1.bigWig
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7S3PctSignalRep1.bigWig
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7S4PctSignalRep1.bigWig
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7SumSignalRep1.bigWig
Named Annotation GSM923442_hg19_wgEncodeUwRepliSeqMcf7WaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923442_hg19_wgEncodeUwRepliSeqMcf7G1bPctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923442_hg19_wgEncodeUwRepliSeqMcf7G2PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923442_hg19_wgEncodeUwRepliSeqMcf7PkRep1.bed.gz 38.4 Kb (ftp)(http) BED
GSM923442_hg19_wgEncodeUwRepliSeqMcf7S1PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923442_hg19_wgEncodeUwRepliSeqMcf7S2PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923442_hg19_wgEncodeUwRepliSeqMcf7S3PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923442_hg19_wgEncodeUwRepliSeqMcf7S4PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923442_hg19_wgEncodeUwRepliSeqMcf7SumSignalRep1.bigWig 12.4 Mb (ftp)(http) BIGWIG
GSM923442_hg19_wgEncodeUwRepliSeqMcf7ValleysRep1.bed.gz 38.4 Kb (ftp)(http) BED
GSM923442_hg19_wgEncodeUwRepliSeqMcf7WaveSignalRep1.bigWig 9.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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