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Sample GSM923441 Query DataSets for GSM923441
Status Public on Apr 27, 2012
Title UW_RepliSeq_SK-N-SH
Sample type SRA
Source name SK-N-SH
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: SK-N-SH
cell organism: human
cell description: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
labexpid: DS9913
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider ATCC
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144812
BioSample SAMN00990231
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshG1bPctSignalRep1.bigWig
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshG2PctSignalRep1.bigWig
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshS1PctSignalRep1.bigWig
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshS2PctSignalRep1.bigWig
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshS3PctSignalRep1.bigWig
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshS4PctSignalRep1.bigWig
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshSumSignalRep1.bigWig
Named Annotation GSM923441_hg19_wgEncodeUwRepliSeqSknshWaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923441_hg19_wgEncodeUwRepliSeqSknshG1bPctSignalRep1.bigWig 8.1 Mb (ftp)(http) BIGWIG
GSM923441_hg19_wgEncodeUwRepliSeqSknshG2PctSignalRep1.bigWig 8.1 Mb (ftp)(http) BIGWIG
GSM923441_hg19_wgEncodeUwRepliSeqSknshPkRep1.bed.gz 38.3 Kb (ftp)(http) BED
GSM923441_hg19_wgEncodeUwRepliSeqSknshS1PctSignalRep1.bigWig 7.9 Mb (ftp)(http) BIGWIG
GSM923441_hg19_wgEncodeUwRepliSeqSknshS2PctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923441_hg19_wgEncodeUwRepliSeqSknshS3PctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923441_hg19_wgEncodeUwRepliSeqSknshS4PctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923441_hg19_wgEncodeUwRepliSeqSknshSumSignalRep1.bigWig 12.4 Mb (ftp)(http) BIGWIG
GSM923441_hg19_wgEncodeUwRepliSeqSknshValleysRep1.bed.gz 38.3 Kb (ftp)(http) BED
GSM923441_hg19_wgEncodeUwRepliSeqSknshWaveSignalRep1.bigWig 9.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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