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Sample GSM923440 Query DataSets for GSM923440
Status Public on Apr 27, 2012
Title UW_RepliSeq_GM12801
Sample type SRA
Source name GM12801
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: GM12801
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed
cell lineage: mesoderm
cell sex: M
labexpid: DS9813
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider Coriell;
Growth protocol GM12801_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
Reanalyzed by GSE130373
SRA SRX144811
BioSample SAMN00990230
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801G1bPctSignalRep1.bigWig
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801G2PctSignalRep1.bigWig
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801S1PctSignalRep1.bigWig
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801S2PctSignalRep1.bigWig
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801S3PctSignalRep1.bigWig
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801S4PctSignalRep1.bigWig
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801SumSignalRep1.bigWig
Named Annotation GSM923440_hg19_wgEncodeUwRepliSeqGm12801WaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923440_hg19_wgEncodeUwRepliSeqGm12801G1bPctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923440_hg19_wgEncodeUwRepliSeqGm12801G2PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923440_hg19_wgEncodeUwRepliSeqGm12801PkRep1.bed.gz 37.5 Kb (ftp)(http) BED
GSM923440_hg19_wgEncodeUwRepliSeqGm12801S1PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923440_hg19_wgEncodeUwRepliSeqGm12801S2PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923440_hg19_wgEncodeUwRepliSeqGm12801S3PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923440_hg19_wgEncodeUwRepliSeqGm12801S4PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923440_hg19_wgEncodeUwRepliSeqGm12801SumSignalRep1.bigWig 12.5 Mb (ftp)(http) BIGWIG
GSM923440_hg19_wgEncodeUwRepliSeqGm12801ValleysRep1.bed.gz 37.6 Kb (ftp)(http) BED
GSM923440_hg19_wgEncodeUwRepliSeqGm12801WaveSignalRep1.bigWig 9.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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