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Sample GSM923439 Query DataSets for GSM923439
Status Public on Apr 27, 2012
Title UW_RepliSeq_GM12812
Sample type SRA
Source name GM12812
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: GM12812
cell organism: human
cell description: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed
cell karyotype: normal
cell lineage: mesoderm
cell sex: M
labexpid: DS9820
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider Coriell;
Growth protocol GM12812_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
Reanalyzed by GSE130373
SRA SRX144810
BioSample SAMN00990229
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812G1bPctSignalRep1.bigWig
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812G2PctSignalRep1.bigWig
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812S1PctSignalRep1.bigWig
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812S2PctSignalRep1.bigWig
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812S3PctSignalRep1.bigWig
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812S4PctSignalRep1.bigWig
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812SumSignalRep1.bigWig
Named Annotation GSM923439_hg19_wgEncodeUwRepliSeqGm12812WaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923439_hg19_wgEncodeUwRepliSeqGm12812G1bPctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923439_hg19_wgEncodeUwRepliSeqGm12812G2PctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923439_hg19_wgEncodeUwRepliSeqGm12812PkRep1.bed.gz 37.1 Kb (ftp)(http) BED
GSM923439_hg19_wgEncodeUwRepliSeqGm12812S1PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923439_hg19_wgEncodeUwRepliSeqGm12812S2PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923439_hg19_wgEncodeUwRepliSeqGm12812S3PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923439_hg19_wgEncodeUwRepliSeqGm12812S4PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923439_hg19_wgEncodeUwRepliSeqGm12812SumSignalRep1.bigWig 12.5 Mb (ftp)(http) BIGWIG
GSM923439_hg19_wgEncodeUwRepliSeqGm12812ValleysRep1.bed.gz 37.3 Kb (ftp)(http) BED
GSM923439_hg19_wgEncodeUwRepliSeqGm12812WaveSignalRep1.bigWig 9.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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