|
| Status |
Public on Jun 21, 2012 |
| Title |
RCC without recurrence 42T2Y_s6_TCGTTG |
| Sample type |
SRA |
| |
|
| Source name |
renal
|
| Organism |
Homo sapiens |
| Characteristics |
tumor group: RCC without recurrence
tissue: clear cell renal cell carcinoma
disease state: clear cell renal cell carcinoma without recurrence
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Modifier Solid SREK protocol to run on the Illumina Flowcells. Previously published by Buermans et al, BMC Genomics. 2010 Dec 20;11:716.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
truncate the sequence reads on the 3'adapter sequence: CGCCTTGG
calculate the frequency of the unique sequences after truncation
Genome_build: Hg19
Supplementary_files_format_and_content: Tab delimited: sequence <tab> frequency
|
| |
|
| Submission date |
Apr 26, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL10999 |
| Series (1) |
| GSE37616 |
Genome-wide microRNA expression analysis of clear cell Renal Cell Carcinoma by next generation deep sequencing |
|
| Relations |
| SRA |
SRX144709 |
| BioSample |
SAMN00989378 |
