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Sample GSM922314 Query DataSets for GSM922314
Status Public on Jan 01, 2016
Title CP_4
Sample type RNA
Source name manually dissected E16 CP tissue
Organism Mus musculus
Characteristics strain: ICR
developmental stage: E16
tissue: CP
Extracted molecule total RNA
Extraction protocol 100 ng of the total RNA was purified by RNeasy Micro (QIAGEN)
Label Cy3
Label protocol Total RNA was amplified following One-Color Microarray-Based Gene Expression Analysis (Low Input Quick Amp Labeling), ver 6.0.
Hybridization protocol The amplified cRNA (1.5 µg) was hybridized on Agilent Whole mouse Genome Array (4 × 44K) ver 2.0 for 17 hours.
Scan protocol The Chips were scanned on a Agilent DNA Microarray Scanner using Feature Extraction software ver (Agilent).
Description manually dissected E16 CP tissue
Data processing Normalized by pergentile shift (75%) and baseline to median of all samples; GeneSpring software ver 11.5.
Entities were filtered based on their signal intensity value (20-100%), and then the standard deviation (< 0.1). Filtered data linked as supplementary file on Series record.
Submission date Apr 25, 2012
Last update date Jan 01, 2016
Contact name Itsuki Ajioka
Organization name Tokyo Medical and Dental University
Department Center for Brain Integration Research
Street address 1-5-45 Yushima, Bunkyo-ku
City Tokyo
ZIP/Postal code 113-8510
Country Japan
Platform ID GPL11202
Series (2)
GSE37576 Gene expression profile of the V/SVZ and the CP at E16
GSE37625 V/SVZ (ventricular/subventricular zone) tissue and CP (cortical plate) tissue at E16

Data table header descriptions
VALUE normalized signal intensity

Data table
GE_BrightCorner -0.5079136
DarkCorner -0.8513341
A_55_P1989846 0.5484667
A_55_P1991598 -0.6572952
A_55_P2022211 0.36954927
A_55_P1980764 -0.31167984
A_55_P1964375 0.5353718
A_51_P128876 0.42695284
A_55_P2121042 -0.66462994
A_52_P219230 -6.67E-01
A_51_P207591 -0.6288104
A_55_P2131920 1.7682362
A_55_P2404223 0.26839638
A_55_P2101944 -1.5206504
A_52_P358860 0.61429644
A_51_P119031 -0.24109507
A_51_P309854 -0.0946269
A_51_P343900 3.63E-01
A_51_P234359 2.1128757
A_51_P487813 0.561357

Total number of rows: 39485

Table truncated, full table size 958 Kbytes.

Supplementary file Size Download File type/resource
GSM922314_08_CP4.txt.gz 2.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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