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Sample GSM922312 Query DataSets for GSM922312
Status Public on Jan 01, 2016
Title CP_2
Sample type RNA
 
Source name manually dissected E16 CP tissue
Organism Mus musculus
Characteristics strain: ICR
developmental stage: E16
tissue: CP
Extracted molecule total RNA
Extraction protocol 100 ng of the total RNA was purified by RNeasy Micro (QIAGEN)
Label Cy3
Label protocol Total RNA was amplified following One-Color Microarray-Based Gene Expression Analysis (Low Input Quick Amp Labeling), ver 6.0.
 
Hybridization protocol The amplified cRNA (1.5 µg) was hybridized on Agilent Whole mouse Genome Array (4 × 44K) ver 2.0 for 17 hours.
Scan protocol The Chips were scanned on a Agilent DNA Microarray Scanner using Feature Extraction software ver 10.7.1.1 (Agilent).
Description manually dissected E16 CP tissue
Data processing Normalized by pergentile shift (75%) and baseline to median of all samples; GeneSpring software ver 11.5.
Entities were filtered based on their signal intensity value (20-100%), and then the standard deviation (< 0.1). Filtered data linked as supplementary file on Series record.
 
Submission date Apr 25, 2012
Last update date Jan 01, 2016
Contact name Itsuki Ajioka
Organization name Tokyo Medical and Dental University
Department Center for Brain Integration Research
Street address 1-5-45 Yushima, Bunkyo-ku
City Tokyo
ZIP/Postal code 113-8510
Country Japan
 
Platform ID GPL11202
Series (2)
GSE37576 Gene expression profile of the V/SVZ and the CP at E16
GSE37625 V/SVZ (ventricular/subventricular zone) tissue and CP (cortical plate) tissue at E16

Data table header descriptions
ID_REF
VALUE normalized signal intensity

Data table
ID_REF VALUE
GE_BrightCorner -0.54120445
DarkCorner -0.3535037
A_55_P1989846 0.36790228
A_55_P1991598 -0.14452314
A_55_P2022211 0.13869524
A_55_P1980764 -0.092619896
A_55_P1964375 0.4994583
A_51_P128876 -0.5729213
A_55_P2121042 -0.16152
A_52_P219230 -1.66E-01
A_51_P207591 -0.36343908
A_55_P2131920 1.7422104
A_55_P2404223 0.12647629
A_55_P2101944 -0.35117197
A_52_P358860 0.36516333
A_51_P119031 -0.17735243
A_51_P309854 -0.013681889
A_51_P343900 0.31013155
A_51_P234359 1.8981779
A_51_P487813 0.41340303

Total number of rows: 39485

Table truncated, full table size 961 Kbytes.




Supplementary file Size Download File type/resource
GSM922312_06_CP2.txt.gz 2.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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