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Sample GSM922309 Query DataSets for GSM922309
Status Public on Jan 01, 2016
Title V/SVZ_3
Sample type RNA
Source name manually dissected E16 V/SVZ tissue
Organism Mus musculus
Characteristics strain: ICR
developmental stage: E16
tissue: V/SVZ
Extracted molecule total RNA
Extraction protocol 100 ng of the total RNA was purified by RNeasy Micro (QIAGEN)
Label Cy3
Label protocol Total RNA was amplified following One-Color Microarray-Based Gene Expression Analysis (Low Input Quick Amp Labeling), ver 6.0.
Hybridization protocol The amplified cRNA (1.5 µg) was hybridized on Agilent Whole mouse Genome Array (4 × 44K) ver 2.0 for 17 hours.
Scan protocol The Chips were scanned on a Agilent DNA Microarray Scanner using Feature Extraction software ver (Agilent).
Description manually dissected E16 V/SVZ tissue
Data processing Normalized by pergentile shift (75%) and baseline to median of all samples; GeneSpring software ver 11.5.
Entities were filtered based on their signal intensity value (20-100%), and then the standard deviation (< 0.1). Filtered data linked as supplementary file on Series record.
Submission date Apr 25, 2012
Last update date Jan 01, 2016
Contact name Itsuki Ajioka
Organization name Tokyo Medical and Dental University
Department Center for Brain Integration Research
Street address 1-5-45 Yushima, Bunkyo-ku
City Tokyo
ZIP/Postal code 113-8510
Country Japan
Platform ID GPL11202
Series (2)
GSE37576 Gene expression profile of the V/SVZ and the CP at E16
GSE37625 V/SVZ (ventricular/subventricular zone) tissue and CP (cortical plate) tissue at E16

Data table header descriptions
VALUE normalized signal intensity

Data table
GE_BrightCorner 0.37996387
DarkCorner -0.08966541
A_55_P1989846 -0.41330576
A_55_P1991598 -0.11578798
A_55_P2022211 -0.05105257
A_55_P1980764 -0.06499529
A_55_P1964375 -0.50358486
A_51_P128876 0.5441289
A_55_P2121042 -0.120144844
A_52_P219230 -0.120749
A_51_P207591 -0.012111187
A_55_P2131920 -2.8695154
A_55_P2404223 -0.12647629
A_55_P2101944 0.18640661
A_52_P358860 -0.36516333
A_51_P119031 0.17735243
A_51_P309854 -0.11107397
A_51_P343900 -0.34369326
A_51_P234359 -2.1741436
A_51_P487813 -0.40042067

Total number of rows: 39485

Table truncated, full table size 963 Kbytes.

Supplementary file Size Download File type/resource
GSM922309_03_VZ3.txt.gz 2.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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