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Sample GSM921 Query DataSets for GSM921
Status Public on Feb 12, 2002
Title alpha factor release sample015
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 15
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n41
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 267 264 112 383 63 321 320 525 103 628 .955 0 -.121 .762 13 10 1.778 1.087 .563 .92 .524 1213 69 20 31 86 97 -.121
2 271 272 587 763 443 322 320 525 726 1251 .952 0 .307 .643 42 40 1.325 .809 .755 1.237 .698 1045 69 20 31 96 107 .307
3 270 272 316 547 227 322 320 525 372 897 .941 0 .235 .842 30 28 1.392 .849 .718 1.177 .668 959 69 20 31 106 117 .235
4 270 272 87 353 33 320 320 525 54 579 .669 0 -.688 .5 20 10 2.636 1.611 .379 .621 .332 959 69 20 31 116 127 -.688
5 268 272 720 1131 811 318 320 525 1329 1854 .937 0 .884 1.351 46 49 .888 .542 1.126 1.846 .969 964 69 20 31 126 137 .884
6 267 264 70 352 32 316 320 525 52 577 .885 0 -.429 .706 15 10 2.188 1.346 .457 .743 .686 955 69 20 31 136 147 -.429
7 265 264 158 403 83 317 320 525 136 661 .889 0 -.216 .625 37 21 1.904 1.162 .525 .861 .497 955 69 20 31 146 157 -.216
8 266 264 401 588 268 317 320 525 439 964 .936 0 .131 .596 57 46 1.496 .913 .668 1.095 .613 955 69 20 31 156 167 .131
9 267 264 64 348 28 316 320 525 45 570 .7 0 -.508 .667 20 7 2.286 1.422 .438 .703 .438 950 69 20 31 166 177 -.508
10 267 272 72 351 31 318 320 525 50 575 .717 0 -.526 .667 15 8 2.323 1.44 .431 .694 .367 950 69 20 31 176 187 -.526
11 270 272 80 345 25 318 320 525 41 566 .841 0 -.964 .509 20 10 3.2 1.951 .313 .513 .454 950 69 20 31 186 197 -.964
12 271 272 59 350 30 318 320 525 49 574 .58 0 -.268 .625 20 4 1.967 1.204 .508 .831 .354 950 69 20 31 196 207 -.268
13 271 272 30 328 8 320 320 525 13 538 .271 0 -1.206 .525 5 2 3.75 2.308 .267 .433 .151 950 69 20 31 206 217 -1.206
14 276 272 223 476 156 323 320 525 255 780 .937 0 .193 .636 20 20 1.429 .875 .7 1.143 .657 950 69 20 31 216 227 .193
15 277 272 249 484 164 324 320 525 268 793 .876 0 .106 .9 26 23 1.518 .929 .659 1.076 .579 950 69 20 31 226 237 .106
16 279 272 367 593 273 324 320 525 447 972 .93 0 .284 .859 26 28 1.344 .821 .744 1.218 .641 950 69 20 31 236 247 .284
17 283 280 60 353 33 324 320 525 54 579 .82 0 -.152 .721 20 11 1.818 1.111 .55 .9 .644 950 69 20 31 246 257 -.152
18 281 280 44 332 12 323 320 525 19 544 .426 0 -1.212 .568 14 1 3.667 2.316 .273 .432 .251 950 69 20 31 256 267 -1.212
19 280 280 27292 393 73 321 320 525 119 644 0 0 -7.841 .004 75 21 373.863 229.345 .003 .004 0 950 69 20 31 266 277 -7.841
20 281 280 595 3797 3477 329 320 525 5700 6225 .912 0 3.26 5.359 62 71 .171 .104 5.844 9.58 4.908 955 69 20 31 276 287 3.26

Total number of rows: 7680

Table truncated, full table size 922 Kbytes.




Supplementary data files not provided
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