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Sample GSM920565 Query DataSets for GSM920565
Status Public on Oct 10, 2012
Title Ssn6 YMW130 052410
Sample type SRA
 
Source name Ssn6 YMW130 052410
Organism Saccharomyces cerevisiae
Characteristics genotype/variation: Ssn6 knockout
genetic background: BY4742
Growth protocol cells were grown to a final OD600nm of 0.8 in 200 mL of YEP containing 2% Glucose
Extracted molecule genomic DNA
Extraction protocol standard Illumina protocol
 
Library strategy MNase-Seq
Library source genomic
Library selection MNase
Instrument model Illumina Genome Analyzer II
 
Data processing Reads are mapped to genome using ELAND. Reads that are uniquely mapped and have no more than 2 mismatches are selected for future analysis. DANPOS is used to calculate nucleosome occupancy from raw reads do following analysis.
Genome_build: sacCer1
Supplementary_files_format_and_content: .wig':nucleosome occupancy data. '.bed':uniquely mapped high quality reads.
 
Submission date Apr 20, 2012
Last update date May 15, 2019
Contact name kaifu chen
E-mail(s) kaifuc@bcm.edu
Organization name Baylor College of Medicine
Street address 1 Baylor plaza, suite 450A
City Houston
ZIP/Postal code 77030
Country USA
 
Platform ID GPL9377
Series (2)
GSE37465 Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor (MNase-Seq)
GSE37467 Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor
Relations
SRA SRX143868
BioSample SAMN00862282

Supplementary file Size Download File type/resource
GSM920565_Ssn6_YMW130_052410.bed.gz 72.1 Mb (ftp)(http) BED
GSM920565_Ssn6_YMW130_052410.wig.gz 2.0 Mb (ftp)(http) WIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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