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Sample GSM918749 Query DataSets for GSM918749
Status Public on Apr 19, 2012
Title LICR_ChipSeq_ES-Bruce4_Pol2_E0
Sample type SRA
Source name ES-Bruce4
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: ES-Bruce4
cell organism: mouse
cell description: mouse embryonic stem cells
cell sex: M
antibody: Pol2
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM001683
labversion: 12/23/09 SOLEXA1 Lane 1
replicate: 1
softwareversion: Bowtie
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider University of California, San Diego Transgenic Core and Embryonic Stem Cell
Growth protocol ES-Bruce4_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 19, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36027 Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX143841
BioSample SAMN00862255
Named Annotation GSM918749_mm9_wgEncodeLicrTfbsEsb4Pol2ME0C57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM918749_mm9_wgEncodeLicrTfbsEsb4Pol2ME0C57bl6StdPk.broadPeak.gz 127.6 Kb (ftp)(http) BROADPEAK
GSM918749_mm9_wgEncodeLicrTfbsEsb4Pol2ME0C57bl6StdSig.bigWig 73.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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