NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM918748 Query DataSets for GSM918748
Status Public on Apr 19, 2012
Title LICR_ChipSeq_ES-Bruce4_CTCF_E0
Sample type SRA
 
Source name ES-Bruce4
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: ES-Bruce4
cell organism: mouse
cell description: mouse embryonic stem cells
cell sex: M
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM001683
labversion: 12/23/09 SOLEXA2 Lane 5
replicate: 1
softwareversion: ELAND
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider University of California, San Diego Transgenic Core and Embryonic Stem Cell
Growth protocol ES-Bruce4_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
 
Submission date Apr 19, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36027 Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSE80791
SRA SRX143840
BioSample SAMN00862254
Named Annotation GSM918748_mm9_wgEncodeLicrTfbsEsb4CtcfME0C57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM918748_mm9_wgEncodeLicrTfbsEsb4CtcfME0C57bl6StdPk.broadPeak.gz 457.1 Kb (ftp)(http) BROADPEAK
GSM918748_mm9_wgEncodeLicrTfbsEsb4CtcfME0C57bl6StdSig.bigWig 71.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap