|
| Status |
Public on Apr 19, 2012 |
| Title |
LICR_ChipSeq_Spleen_CTCF_adult-8wks |
| Sample type |
SRA |
| |
|
| Source name |
Spleen
|
| Organism |
Mus musculus |
| Characteristics |
lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Spleen
cell organism: mouse
cell description: Spleen
cell sex: M
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM001459
labversion: 09/19/10 Lane 8B
replicate: 1
softwareversion: Bowtie
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
| Biomaterial provider |
1) LICR lab; 2)Stam Lab
|
| Growth protocol |
Spleen_Ren_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
|
| |
|
| Submission date |
Apr 19, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE36027 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
| Relations |
| SRA |
SRX143837 |
| BioSample |
SAMN00862251 |
| Named Annotation |
GSM918745_mm9_wgEncodeLicrTfbsSpleenCtcfMAdult8wksC57bl6StdSig.bigWig |
