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Sample GSM918707 Query DataSets for GSM918707
Status Public on Apr 19, 2012
Title LICR_ChipSeq_MEL_Pol2_immortalized
Sample type SRA
 
Source name MEL
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
antibody: Pol2
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM002652
labversion: 12/8/2011 Lane 1-4 and 2/16/2012 Lane 4-4
replicate: 1
softwareversion: Bowtie
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
 
Submission date Apr 19, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (3)
GSE36027 Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX143799
BioSample SAMN00862213
Named Annotation GSM918707_mm9_wgEncodeLicrTfbsMelPol2MImmortalC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM918707_mm9_wgEncodeLicrTfbsMelPol2MImmortalC57bl6StdPk.broadPeak.gz 196.7 Kb (ftp)(http) BROADPEAK
GSM918707_mm9_wgEncodeLicrTfbsMelPol2MImmortalC57bl6StdSig.bigWig 60.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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