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Sample GSM917073 Query DataSets for GSM917073
Status Public on Jul 27, 2012
Title Primary medulloblastoma sample_MB-331
Sample type RNA
Source name Primary medulloblastoma
Organism Homo sapiens
Characteristics age: 8.0
gender: M
histology: Classic
subgroup: Group 3
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from frozen medulloblastoma tissue using the Trizol method (Invitrogen) as directed by the manufacturer. RNA integrity was assessed using the Agilent 2100 Bioanalyzer prior to processing for the Gene Array. Samples with RIN values ≥7 were included in the study.
Label Biotin
Label protocol As directed by Affymetrix using 400ng total RNA as starting material.
Hybridization protocol As directed by Affymetrix.
Scan protocol As directed by Affymetrix.
Description MB-331
Data processing Signal estimates for Gene Level Analysis were determined using Affymetrix Expression Console (1.1) and default paramters. Samples were analyzed in three separate batches according to medulloblastoma subgroup affilliation: SHH, Group 3, and Group 4.
Submission date Apr 18, 2012
Last update date Jul 27, 2012
Contact name Paul A. Northcott
Organization name German Cancer Research Center (DKFZ)
Street address Im Neuenheimer Feld 280
ZIP/Postal code 69120
Country Germany
Platform ID GPL11532
Series (2)
GSE37382 Subgroup specific somatic copy number aberrations in the medulloblastoma genome [mRNA]
GSE37385 Subgroup specific somatic copy number aberrations in the medulloblastoma genome

Data table header descriptions
VALUE RMA signal intensity.

Data table
7896736 6.26
7896738 2.84
7896740 2.51
7896742 9.02
7896744 6.54
7896746 8.13
7896748 5.38
7896750 2.98
7896752 8
7896754 8.86
7896756 4.99
7896759 7.57
7896761 4.76
7896779 5.6
7896798 4.98
7896817 4.39
7896822 5.66
7896859 2.97
7896861 2.97
7896863 4.85

Total number of rows: 33297

Table truncated, full table size 419 Kbytes.

Supplementary file Size Download File type/resource
GSM917073_HTHuGene11_102611K_MT482_MB-331.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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