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Sample GSM916816 Query DataSets for GSM916816
Status Public on Oct 10, 2013
Title TET2 Mutant mRNA 3
Sample type RNA
Source name lymphoma biopsies
Organism Homo sapiens
Characteristics genotype: TET2 Mutant
tissue: lymphoma biopsy
Growth protocol Patient Samples
Extracted molecule total RNA
Extraction protocol RNA was extracted from fresh frozen lymphoma biopsies using RNeasy mini kit (Qiagen Valenica, CA)
Label biotin
Label protocol Starting from 5 µg total RNA, labeled cRNA was prepared using the Roche Microarray cDNA Synthesis, Microarray RNA Target Synthesis (T7) and Microarray Target Purification Kit, according to the manufacturer's instructions
Hybridization protocol Following fragmentation, 15 µg of cRNA were hybridized for 16hr on Affymetrix HuGene-1_0-st [transcript (gene version)] as recommended by manufacturer
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
Description Gene expression data from TET2 mutant patient sample
Data processing The data was analyzed with Gene Spring GX 12
Submission date Apr 17, 2012
Last update date Oct 10, 2013
Contact name Vasu Punj
Organization name USC
Street address Biggy Street
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
Platform ID GPL6244
Series (2)
GSE37363 TET2 loss-of-function mutations associate with a DNA hypermethylation signature in diffuse large B-cell lymphoma (mRNA)
GSE37365 TET2 loss-of-function mutations associate with a DNA hypermethylation signature in diffuse large B-cell lymphoma

Data table header descriptions
VALUE PLIER 16 normalized

Data table
7896736 33.662952
7896738 25.463636
7896740 21.27647
7896742 111.06335
7896744 21.243073
7896746 254.49771
7896748 188.28568
7896750 113.996315
7896752 471.94287
7896754 74.52218
7896756 46.38118
7896759 30.059834
7896761 85.199585
7896779 102.86177
7896798 56.58989
7896817 196.83026
7896822 77.130035
7896859 81.30933
7896861 18.302963
7896863 87.56683

Total number of rows: 28869

Table truncated, full table size 497 Kbytes.

Supplementary file Size Download File type/resource
GSM916816_G12-HuGene-1_0-st.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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