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Sample GSM915188 Query DataSets for GSM915188
Status Public on Apr 13, 2012
Title Caltech_ChipSeq_C2C12_CTCF_Control_32bp
Sample type SRA
 
Source name C2C12
Organism Mus musculus
Characteristics lab: Caltech-m
lab description: Wold - Califonia Institute of Technology
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: C2C12
cell organism: mouse
cell description: Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex: F
antibody: CTCF
antibody description: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
control: Control_32bp
control description: This data represents a control being compared to experiments using read length of 32 bp
treatment: None
treatment description: No special treatment or protocol applies
age: immortalized
age description: Immortal cells
control: Control_32bp
control description: This data represents a control being compared to experiments using read length of 32 bp
controlid: 10135
labexpid: 10506
labversion: Myoblast
replicate: 1
strain: C3H
strain description: Strain C3H, Very related to C57BL/6
Biomaterial provider Barbara Wold lab
Treatment protocol None
Growth protocol C2C12_Wold_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCaltechTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCaltechTfbs
 
Submission date Apr 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36024 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX142539
BioSample SAMN00857828
Named Annotation GSM915188_mm9_wgEncodeCaltechTfbsC2c12CtcfFCntrl32bPcr2xSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM915188_mm9_wgEncodeCaltechTfbsC2c12CtcfFCntrl32bPcr2xPkRep1.narrowPeak.gz 335.5 Kb (ftp)(http) NARROWPEAK
GSM915188_mm9_wgEncodeCaltechTfbsC2c12CtcfFCntrl32bPcr2xSigRep1.bigWig 60.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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