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Sample GSM915182 Query DataSets for GSM915182
Status Public on Apr 13, 2012
Title Caltech_ChipSeq_C2C12_FOSL1_(sc-605)_Control_36bp
Sample type SRA
 
Source name C2C12
Organism Mus musculus
Characteristics lab: Caltech-m
lab description: Wold - Califonia Institute of Technology
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: C2C12
cell organism: mouse
cell description: Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex: F
antibody: FOSL1_(sc-605)
antibody description: Rabbit polyclonal antibody raised against the N-terminus of FOSL1 of rat origin. Antibody Target: FOSL1
antibody targetdescription: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-605
control: Control_36bp
control description: This data represents a control being compared to experiments using read length of 36 bp
treatment: None
treatment description: No special treatment or protocol applies
age: immortalized
age description: Immortal cells
control: Control_36bp
control description: This data represents a control being compared to experiments using read length of 36 bp
controlid: 11612
labexpid: 11565
labversion: Myoblast
replicate: 1
strain: C3H
strain description: Strain C3H, Very related to C57BL/6
Biomaterial provider Barbara Wold lab
Treatment protocol None
Growth protocol C2C12_Wold_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCaltechTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCaltechTfbs
 
Submission date Apr 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36024 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX142533
BioSample SAMN00857822
Named Annotation GSM915182_mm9_wgEncodeCaltechTfbsC2c12Fosl1sc605FCntrl36bPcr1xSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM915182_mm9_wgEncodeCaltechTfbsC2c12Fosl1sc605FCntrl36bPcr1xPkRep1.narrowPeak.gz 103.4 Kb (ftp)(http) NARROWPEAK
GSM915182_mm9_wgEncodeCaltechTfbsC2c12Fosl1sc605FCntrl36bPcr1xSigRep1.bigWig 71.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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