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Sample GSM913219 Query DataSets for GSM913219
Status Public on Apr 12, 2012
Title D106
Sample type RNA
 
Source name ovarian tissue biopsy
Organism Homo sapiens
Characteristics batch: 1
percent.present: 48.53
scale.factor: 1.07
gapdh.3.5: 3.08
actin.3.5: 10.24
average.correlation: 0.92
qc.flag: FAIL
patient identifier: D106
indicator of clinical response (cr=1/pr=2/sd=3): 3
overall survival (years): 1.449539636
status for overall survival (1=death, 0=censored): 1
progression free survival (years): 0.614754098
status for progression free survival (1=death, 0=censored): 1
objective response (1 = cr or pr, 0= sd): 0
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Prepared samples using the Affymetrix GeneChip ENZO one cycle labeling kit
 
Hybridization protocol Hybridization of samples to  Affymetrix GeneChip arrays was performed according to Affymetrix manual instructions
Scan protocol Scanning of Affymetrix GeneChip arrays was performed according to the Affymerix manual instructions
Description D106
Data processing Data is RMA normalized using R/Bioconductor
 
Submission date Apr 11, 2012
Last update date Apr 25, 2012
Contact name Miao yu
E-mail(s) miao.yu@duke.edu
Organization name Duke
Street address Laselle drive
City durham
ZIP/Postal code 27710
Country USA
 
Platform ID GPL571
Series (1)
GSE37180 Gene expression profiles of ovarian tumor biopsies from Phase I dasatinib trial

Data table header descriptions
ID_REF
VALUE RMA (log2) expression estimates

Data table
ID_REF VALUE
1007_s_at 10.90865624
1053_at 7.926005128
117_at 5.193527243
121_at 10.27229243
1255_g_at 3.899494056
1294_at 8.51958107
1316_at 6.119648709
1320_at 5.026427729
1405_i_at 4.910781877
1431_at 3.664247326
1438_at 6.020764816
1487_at 8.650199163
1494_f_at 5.379652367
1598_g_at 10.57817695
160020_at 8.01280394
1729_at 7.356735867
1773_at 4.678147852
177_at 5.106671018
179_at 8.695997345
1861_at 6.161033738

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM913219_2539_6652_31751_8secord_HG-U133A+2.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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