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Sample GSM912912 Query DataSets for GSM912912
Status Public on Apr 11, 2012
Title Stanford_ChipSeq_CH12_E2F4_IgG-rab
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: E2F4
antibody antibodydescription: rabbit polyclonal. Antibody Target: E2F4
antibody targetdescription: mapping at the C-terminus of E2F4 of human origin
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-866
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
age: immortalized
age description: Immortal cells
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: CH12/None/Input/IgG-rab
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36030 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX140375
BioSample SAMN00854835
Named Annotation GSM912912_mm9_wgEncodeSydhTfbsCh12E2f4IggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM912912_mm9_wgEncodeSydhTfbsCh12E2f4IggrabPk.narrowPeak.gz 68.1 Kb (ftp)(http) NARROWPEAK
GSM912912_mm9_wgEncodeSydhTfbsCh12E2f4IggrabSig.bigWig 227.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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