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Sample GSM912910 Query DataSets for GSM912910
Status Public on Apr 11, 2012
Title Stanford_ChipSeq_CH12_USF2_IgG-mus
Sample type SRA
 
Source name CH12
Organism Mus musculus
Characteristics lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: USF2
antibody antibodydescription: Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2
antibody targetdescription: Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').
antibody vendorname: abcam
antibody vendorid: ab60931
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
age: immortalized
age description: Immortal cells
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
controlid: CH12/None/Input/IgG-mus
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
 
Submission date Apr 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36030 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX140373
BioSample SAMN00854833
Named Annotation GSM912910_mm9_wgEncodeSydhTfbsCh12Usf2IggmusSig.bigWig

Supplementary file Size Download File type/resource
GSM912910_mm9_wgEncodeSydhTfbsCh12Usf2IggmusPk.narrowPeak.gz 267.6 Kb (ftp)(http) NARROWPEAK
GSM912910_mm9_wgEncodeSydhTfbsCh12Usf2IggmusSig.bigWig 322.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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