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Sample GSM912907 Query DataSets for GSM912907
Status Public on Apr 11, 2012
Title Stanford_ChipSeq_MEL_GATA-1_IgG-rat
Sample type SRA
Source name MEL
Organism Mus musculus
Characteristics lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
antibody: GATA-1
antibody antibodydescription: Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1
antibody targetdescription: GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.
antibody vendorname: Donated by Dr. E.H. Bresnick, UW Madison
antibody vendorid: GATA-1
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-rat
control description: Input signal from Normal Rat IgG ChIP-seq
age: immortalized
age description: Immortal cells
control: IgG-rat
control description: Input signal from Normal Rat IgG ChIP-seq
controlid: MEL/None/Input/IgG-rat
replicate: 1
strain: Unknown
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36030 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX140370
BioSample SAMN00854830
Named Annotation GSM912907_mm9_wgEncodeSydhTfbsMelGata1IggratSig.bigWig

Supplementary file Size Download File type/resource
GSM912907_mm9_wgEncodeSydhTfbsMelGata1IggratPk.narrowPeak.gz 1.1 Mb (ftp)(http) NARROWPEAK
GSM912907_mm9_wgEncodeSydhTfbsMelGata1IggratSig.bigWig 260.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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