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Sample GSM912900 Query DataSets for GSM912900
Status Public on Apr 11, 2012
Title Stanford_ChipSeq_CH12_TBP_IgG-mus
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: TBP
antibody antibodydescription: Mouse monoclonal. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP
antibody targetdescription: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription.
antibody vendorname: abcam
antibody vendorid: ab62126
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
age: immortalized
age description: Immortal cells
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
controlid: CH12/None/Input/IgG-mus
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36030 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX140363
BioSample SAMN00854823
Named Annotation GSM912900_mm9_wgEncodeSydhTfbsCh12TbpIggmusSig.bigWig

Supplementary file Size Download File type/resource
GSM912900_mm9_wgEncodeSydhTfbsCh12TbpIggmusPk.narrowPeak.gz 367.4 Kb (ftp)(http) NARROWPEAK
GSM912900_mm9_wgEncodeSydhTfbsCh12TbpIggmusSig.bigWig 203.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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