|
Status |
Public on Apr 11, 2012 |
Title |
Stanford_ChipSeq_CH12_TBP_IgG-mus |
Sample type |
SRA |
|
|
Source name |
CH12
|
Organism |
Mus musculus |
Characteristics |
lab: Stanford-m lab description: Snyder - Stanford University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: CH12 cell organism: mouse cell description: B-cell lymphoma (GM12878 analog) cell sex: F antibody: TBP antibody antibodydescription: Mouse monoclonal. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP antibody targetdescription: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. antibody vendorname: abcam antibody vendorid: ab62126 treatment: None treatment description: No special treatment or protocol applies control: IgG-mus control description: Input signal from Normal Mouse IgG ChIP-seq. age: immortalized age description: Immortal cells control: IgG-mus control description: Input signal from Normal Mouse IgG ChIP-seq. controlid: CH12/None/Input/IgG-mus replicate: 1 strain: B10.H-2aH-4bp/Wts strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
|
Biomaterial provider |
Weissman lab
|
Treatment protocol |
None
|
Extracted molecule |
genomic DNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
|
|
Submission date |
Apr 11, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (3) |
GSE36030 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX140363 |
BioSample |
SAMN00854823 |
Named Annotation |
GSM912900_mm9_wgEncodeSydhTfbsCh12TbpIggmusSig.bigWig |