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Sample GSM910305 Query DataSets for GSM910305
Status Public on Jan 28, 2013
Title striated_muscle_LMNA_KO_2
Sample type SRA
Source name striated muscle
Organism Mus musculus
Characteristics sample type: striated_muscle_LMNA_KO
tissue: striated muscle
strain: C57Bl/6
genotype/variation: LMNA_KO
Extracted molecule total RNA
Extraction protocol total RNA was isolated by the TRIZOL method and purified with RNeasy kit. NUGEN ovation RNA-Seq (samples 1-6) and NUGEN complete RNA-Seq protocol (samples 7-12)
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
Data processing demultiplexing and barcode clipping
quality filtering
mapping with tophat1.2.0, USCS known genes, mm9
Genome_build: mm9
Supplementary_files_format_and_content: fpkm_values.xls;normalized expression values used for assessment of differential gene expression, only one fpkm value is calculated per sample type
Submission date Apr 06, 2012
Last update date May 15, 2019
Contact name Stefan Krebs
Phone 0049-89-2180 76715
Organization name Ludwig-Maximilian University
Department Gene Center
Lab Lafuga Genomics
Street address Feodor-Lynen-Str. 25
City Munich
ZIP/Postal code 81377
Country Germany
Platform ID GPL11002
Series (1)
GSE37076 Lamin and Lamin B receptor knockout
SRA SRX136614
BioSample SAMN00849852

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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