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Sample GSM910298 Query DataSets for GSM910298
Status Public on Jan 28, 2013
Title myoblast_LBR_wt
Sample type SRA
 
Source name myoblast
Organism Mus musculus
Characteristics sample type: myoblast_LBR_wt
tissue: myoblast
strain: C57Bl/6
genotype/variation: wt
Extracted molecule total RNA
Extraction protocol total RNA was isolated by the TRIZOL method and purified with RNeasy kit. NUGEN ovation RNA-Seq (samples 1-6) and NUGEN complete RNA-Seq protocol (samples 7-12)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
 
Data processing demultiplexing and barcode clipping
quality filtering
mapping with tophat1.2.0, USCS known genes, mm9
cuffdiff0.0.5
Genome_build: mm9
Supplementary_files_format_and_content: fpkm_values.xls;normalized expression values used for assessment of differential gene expression, only one fpkm value is calculated per sample type
 
Submission date Apr 06, 2012
Last update date May 15, 2019
Contact name Stefan Krebs
E-mail(s) krebs-st@lmb.uni-muenchen.de
Phone 0049-89-2180 76715
Organization name Ludwig-Maximilian University
Department Gene Center
Lab Lafuga Genomics
Street address Feodor-Lynen-Str. 25
City Munich
ZIP/Postal code 81377
Country Germany
 
Platform ID GPL11002
Series (1)
GSE37076 Lamin and Lamin B receptor knockout
Relations
SRA SRX136607
BioSample SAMN00849845

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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