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Sample GSM909275 Query DataSets for GSM909275
Status Public on Jan 22, 2013
Title CSES2-SO2/3 early endodermal progenitors control
Sample type RNA
Source name CSES2-SO2/3 early endodermal progenitors, control
Organism Homo sapiens
Characteristics cell type: human embryonic stem cells differentiated into early endodermal progenitor cells
genotype/variation: 49(X,X, add(1)(q22~q31),+4,+14,+20)
age: passage 35
cell line: CSES2-SO2/3
treatment: DMSO vehicle
Treatment protocol 8d-differentiated early endodermal progenitor cells were exposed to 0.02% DMSO for 12 h.
Growth protocol Cells were grown according to the protocol of Duan et al. (Stem Cells, 2010)
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using 5 Prime RNA isolation kit.
Label biotin
Label protocol 200ng total RNA, Affymetrix protocol.
Hybridization protocol Affymetrix protocol, 11ug cRNA.
Scan protocol GeneChip scanner 3000 7G, GeneChip Operating Software v1.4.
Description Gene expression data from 8d-differentiated early endodermal progenitor cells exposed to 0.02% DMSO for 12 h.
Data processing Affymetrix Expression Console MAS5.
Submission date Apr 04, 2012
Last update date May 22, 2014
Contact name Uri Ben-David
Phone 97226585185
Organization name Hebrew University
Department Genetics
Lab Nissim Benvenisty
Street address Givat-Ram
City Jerusalem
ZIP/Postal code 91904
Country Israel
Platform ID GPL571
Series (1)
GSE37040 Expression data from human pluripotent stem cells and differentiated cells treated with pluripotent-specific inhibitors

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 632.5345
1053_at 675.6379
117_at 33.15446
121_at 89.22124
1255_g_at 77.68068
1294_at 44.83812
1316_at 22.09951
1320_at 85.47539
1405_i_at 10.78396
1431_at 10.85287
1438_at 17.79846
1487_at 234.1219
1494_f_at 29.73712
1598_g_at 318.7416
160020_at 581.0904
1729_at 102.8395
177_at 36.14123
1773_at 29.08399
179_at 75.58566
1861_at 119.4516

Total number of rows: 22215

Table truncated, full table size 429 Kbytes.

Supplementary file Size Download File type/resource
GSM909275_CSES2-SO2_3_early_endodermal_progenitors_control.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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