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Sample GSM907006 Query DataSets for GSM907006
Status Public on Nov 12, 2012
Title Hypopharyngeal squamous cell carcinoma (HSCC) No.37
Sample type RNA
 
Channel 1
Source name HSCC37N
Organism Homo sapiens
Characteristics tissue type: Non-tumorous tissue
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy3
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
Channel 2
Source name HSCC37T
Organism Homo sapiens
Characteristics tissue type: Tumor tissue
age (yrs): 74
gender: male
histlogical type: basaloid squamous cell carcinoma
Stage: IVA
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy5
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
 
Hybridization protocol Agilent two-color gene expression hyb/wash protocol
Scan protocol Microarray slides were scanned in an Agilent Technologies G2505B Microarray Scanner at 5 micron resolution. Images were quantified using Agilent Feature Extraction software version 9.5.3
Description HSCC37
Data processing LOWESS normalized, background subtracted VALUE data obtained from log10 of processed Red signal/processed Green signal. Agilent software was used.
 
Submission date Mar 30, 2012
Last update date Nov 12, 2012
Contact name Naohiko Seki
E-mail(s) naoseki@faculty.chiba-u.jp
Phone 81-43-226-2971
Fax 81-43-227-3442
Organization name Chiba University
Department School of Medicine
Lab Functional Genomics
Street address 1-8-1 Inohana,Chuo-ku
City Chiba
State/province Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platform ID GPL13607
Series (1)
GSE36951 Gene expression profiles of head and neck squamous cell carcinoma and renal cell carcinoma

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -5.193019065e-002
2 0.000000000e+000
3 -1.624592725e-001
4 -1.120249221e-001
5 2.100288746e-001
6 5.463468251e-001
7 -2.129744537e-001
8 -1.250320755e-001
9 0.000000000e+000
10 3.974495862e-001
11 0.000000000e+000
12 -8.612536495e-002
13 1.437227598e-001
14 -1.131776908e-001
15 -1.887336686e-001
16 0.000000000e+000
17 -1.223299271e-001
18 0.000000000e+000
19 3.110740029e-001
20 -2.053347169e-001

Total number of rows: 62976

Table truncated, full table size 1427 Kbytes.




Supplementary file Size Download File type/resource
GSM907006_A14-H37-T_H37-N.txt.gz 21.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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