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Sample GSM907000 Query DataSets for GSM907000
Status Public on Nov 12, 2012
Title Maxillary sinus squamous cell carcinoma (MSSCC) No.40
Sample type RNA
 
Channel 1
Source name MSSCC40N
Organism Homo sapiens
Characteristics tissue type: Non-tumorous tissue
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy3
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
Channel 2
Source name MSSCC40T
Organism Homo sapiens
Characteristics tissue type: Tumor tissue
age (yrs): 77
gender: female
histlogical type: poorly differentiated squamous cell carcinoma
Stage: IVC
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy5
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
 
Hybridization protocol Agilent two-color gene expression hyb/wash protocol
Scan protocol Microarray slides were scanned in an Agilent Technologies G2505B Microarray Scanner at 5 micron resolution. Images were quantified using Agilent Feature Extraction software version 9.5.3
Description MSSCC40
Data processing LOWESS normalized, background subtracted VALUE data obtained from log10 of processed Red signal/processed Green signal. Agilent software was used.
 
Submission date Mar 30, 2012
Last update date Nov 12, 2012
Contact name Naohiko Seki
E-mail(s) naoseki@faculty.chiba-u.jp
Phone 81-43-226-2971
Fax 81-43-227-3442
Organization name Chiba University
Department School of Medicine
Lab Functional Genomics
Street address 1-8-1 Inohana,Chuo-ku
City Chiba
State/province Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platform ID GPL13607
Series (1)
GSE36951 Gene expression profiles of head and neck squamous cell carcinoma and renal cell carcinoma

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -2.329015365e-001
2 0.000000000e+000
3 0.000000000e+000
4 2.852538828e-001
5 3.360041740e-001
6 3.724390499e-001
7 -7.645985181e-002
8 6.344169734e-002
9 -5.801709042e-001
10 1.965998450e-001
11 0.000000000e+000
12 1.538826300e-001
13 3.437287363e-001
14 1.362272520e-001
15 1.026345270e-001
16 -7.977742668e-001
17 -2.411813776e-003
18 -4.823557733e-002
19 0.000000000e+000
20 -2.898582024e-003

Total number of rows: 62976

Table truncated, full table size 1425 Kbytes.




Supplementary file Size Download File type/resource
GSM907000_A8-OKK40T_OKK40N.txt.gz 21.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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