|
Status |
Public on Jun 18, 2012 |
Title |
G9A knockout |
Sample type |
SRA |
|
|
Source name |
G9A TT2 ES cells
|
Organism |
Mus musculus |
Characteristics |
genotype: G9A KO treatment: 4OHT treated cell type: embryonic stem cells
|
Treatment protocol |
RNA prepared by RiboPure (ambion)
|
Growth protocol |
Stadard ES cell conditions with Lif
|
Extracted molecule |
total RNA |
Extraction protocol |
TruSeq RNA sample prep kit
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
Paired end alignments with Tophat allowing 4 mismatches per 100 bp Genome Build: G9a_KO.bed: mm9
|
|
|
Submission date |
Mar 28, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Todd Macfarlan |
E-mail(s) |
macfarlan@salk.edu
|
Organization name |
The Salk Institute
|
Street address |
10010 North Torrey Pines
|
City |
La Jolla |
State/province |
CA |
ZIP/Postal code |
92037 |
Country |
USA |
|
|
Platform ID |
GPL13112 |
Series (2) |
GSE33923 |
2C::tomato ES cells, 2-cell embryos and wild type oocytes |
GSE36896 |
RNA-Seq from wt and G9A knockout ES cells |
|
Relations |
SRA |
SRX132054 |
BioSample |
SAMN00847506 |