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Sample GSM902 Query DataSets for GSM902
Status Public on Feb 12, 2002
Title alpha factor release sample021
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 21
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n90
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 438 384 166 575 119 563 456 724 189 913 .83 0 .187 .755 33 17 1.395 .878 .717 1.139 .818 967 80 12 22 89 99 .187
2 475 408 243 671 175 624 496 787 278 1065 .923 0 .194 .803 20 18 1.389 .874 .72 1.144 .825 763 80 12 22 99 109 .194
3 490 416 144 573 61 675 512 813 97 910 .818 0 -.57 .646 18 13 2.361 1.485 .424 .674 .749 705 80 12 22 109 119 -.57
4 487 408 103 548 28 686 520 825 45 870 .838 0 -1.195 .739 18 17 3.679 2.289 .272 .437 .905 715 80 12 22 119 129 -1.195
5 500 416 154 674 138 706 536 851 219 1070 .912 0 .508 1.094 23 21 1.116 .703 .896 1.422 1.117 724 80 12 22 129 139 .508
6 506 424 49 522 715 560 889 829 .819 0 .883 13 11 .964 727 80 12 22 139 149
7 519 440 436 720 568 902 692 .789 0 .349 8 0 1.207 725 80 12 22 149 159
8 549 480 463 813 221 745 592 940 350 1290 .864 0 -.404 .617 36 30 2.095 1.323 .477 .756 .65 724 80 13 23 159 169 -.404
9 555 488 91 576 745 592 940 914 .789 0 .436 17 13 .872 724 80 13 23 169 179
10 566 512 1570 2604 2020 739 584 927 3206 4133 .889 0 1.03 .941 20 21 .777 .49 1.287 2.042 .973 725 80 13 23 179 189 1.03
11 574 520 237 744 176 719 568 902 279 1181 .382 0 .235 .791 21 21 1.347 .849 .743 1.177 .311 734 80 13 23 189 199 .235
12 550 504 222 703 159 665 544 863 253 1116 .844 0 .189 .757 17 16 1.396 .877 .716 1.14 .756 745 80 13 23 199 209 .189
13 541 496 452 633 528 838 717 .816 0 2 0 0 1.399 757 80 13 23 209 219
14 555 480 48 498 616 512 813 790 .847 0 .714 7 5 .667 772 80 13 23 219 229
15 537 456 31 475 582 480 762 754 .846 0 .504 8 7 .628 777 80 13 23 229 239
16 506 416 116 499 43 547 456 724 68 792 .877 0 -.771 .712 12 8 2.698 1.706 .371 .586 .527 777 80 13 23 239 249 -.771
17 489 400 449 780 348 521 432 686 552 1238 .881 0 .298 .766 22 20 1.29 .813 .775 1.229 .673 777 80 14 24 249 259 .298
18 419 376 345 655 239 469 416 660 380 1040 .954 0 .139 .739 22 23 1.444 .908 .693 1.101 .673 781 80 14 24 259 269 .139
19 387 368 20004 495 79 450 416 660 126 786 .627 0 -7.311 .007 66 22 253.215 158.762 .004 .006 .006 787 80 14 24 269 279 -7.311
20 418 360 322 2418 1994 494 424 673 3165 3838 .676 0 3.297 5.824 42 60 .161 .102 6.193 9.829 2.722 777 80 14 24 279 289 3.297

Total number of rows: 7680

Table truncated, full table size 928 Kbytes.




Supplementary data files not provided
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