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Sample GSM896428 Query DataSets for GSM896428
Status Public on Mar 12, 2013
Title MeCP2-G273X_ChIP-Seq
Sample type SRA
Source name Whole Brain
Organism Mus musculus
Characteristics tissue: Adult whole brain
genotype/variation: Mecp2 -/y; MECP2-G273X TG
background mouse strain: FVB;129SvEv
antibody: anti-GFP
vendor: Abcam
catalog#: ab6556
Extracted molecule genomic DNA
Extraction protocol Lysates were clarified from sonicated/micrococcal nuclease treated nuclei and MeCP2-DNA complexes were isolated with antibody. Libraries were prepared from 10 ng of ChIPed DNA and sequenced on the Illumina Solexa HiSeq according to manufacturer protocols.
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing The reference genome is mm9. CASAVA-1.7.0
Submission date Mar 15, 2012
Last update date May 15, 2019
Contact name Peng Yu
Organization name BCM
Street address 1 Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platform ID GPL13112
Series (1)
GSE36536 MeCP2-R270X and MeCP2-G273X ChIP-Seq
SRA SRX130250
BioSample SAMN00829031

Supplementary file Size Download File type/resource
GSM896428_28183s_8_sorted.txt.gz 2.2 Gb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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