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| Status |
Public on Mar 12, 2013 |
| Title |
MeCP2-G273X_ChIP-Seq |
| Sample type |
SRA |
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| Source name |
Whole Brain
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| Organism |
Mus musculus |
| Characteristics |
tissue: Adult whole brain
genotype/variation: Mecp2 -/y; MECP2-G273X TG
background mouse strain: FVB;129SvEv
antibody: anti-GFP
vendor: Abcam
catalog#: ab6556
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Lysates were clarified from sonicated/micrococcal nuclease treated nuclei and MeCP2-DNA complexes were isolated with antibody. Libraries were prepared from 10 ng of ChIPed DNA and sequenced on the Illumina Solexa HiSeq according to manufacturer protocols.
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
The reference genome is mm9. CASAVA-1.7.0
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| Submission date |
Mar 15, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Peng Yu |
| Organization name |
BCM
|
| Street address |
1 Baylor Plaza
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| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
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| Platform ID |
GPL13112 |
| Series (1) |
| GSE36536 |
MeCP2-R270X and MeCP2-G273X ChIP-Seq |
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| Relations |
| SRA |
SRX130250 |
| BioSample |
SAMN00829031 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM896428_28183s_8_sorted.txt.gz |
2.2 Gb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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