GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM896029 Query DataSets for GSM896029
Status Public on Dec 01, 2012
Title Control biological rep 3
Sample type RNA
Source name Control mouse
Organism Mus musculus
Characteristics Sex: female
genotype: Control mouse
tissue: liver
genetic background: C57BL/6J
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from frozen mouse tissues using the Trizol reagent (Invitrogen) as per manufacturer’s instructions. The isolated RNA was subsequently purified with the RNeasy Plus Mini Kits (Qiagen),
Label biotin
Label protocol Fragmented single-stranded sense DNA was end labeled with biotin according to the Affymetrx Gene chip WT Terminal Labeling and hybridization user manual
Hybridization protocol The Gene Chip Mouse Gene 1.1 ST Array Plate was hybridized in the Affymetrix Gene Titan Instrument standard procedure
Scan protocol The Gene Chip Mouse Gene 1.1 ST Array Plate was scanned in Affymetrix Gene Titan Instrument standard procedure
Data processing The data were analyzed with oilgo package (version 1.16.0) in Bioconductor. Transcripts level were summaried for core probesets using RMA.
Submission date Mar 14, 2012
Last update date Dec 01, 2012
Contact name Marko Matic
Organization name Karolinska Institutet
Street address Halsovägen 7
City Huddinge
ZIP/Postal code 14183
Country Sweden
Platform ID GPL11533
Series (1)
GSE36514 Estrogen signaling and the Metabolic Syndrome: Targeting the hepatic ERalpha action

Data table header descriptions
VALUE log2 RMA signal

Data table
10338001 11.31831357
10338002 4.150811363
10338003 9.607361346
10338004 8.975607641
10338005 1.846113995
10338006 2.10814568
10338007 2.355854463
10338008 2.667762921
10338009 6.19334406
10338010 1.885021736
10338011 3.644216982
10338012 1.946647138
10338013 1.669956378
10338014 1.715849709
10338015 1.651874677
10338016 5.088850353
10338017 12.6878028
10338018 4.531122278
10338019 3.289171218
10338020 6.002251101

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.

Supplementary file Size Download File type/resource
GSM896029_MM9_A07.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap