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Sample GSM896027 Query DataSets for GSM896027
Status Public on Dec 01, 2012
Title Control biological rep 1
Sample type RNA
Source name Control mouse
Organism Mus musculus
Characteristics Sex: female
genotype: Control mouse
tissue: liver
genetic background: C57BL/6J
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from frozen mouse tissues using the Trizol reagent (Invitrogen) as per manufacturer’s instructions. The isolated RNA was subsequently purified with the RNeasy Plus Mini Kits (Qiagen),
Label biotin
Label protocol Fragmented single-stranded sense DNA was end labeled with biotin according to the Affymetrx Gene chip WT Terminal Labeling and hybridization user manual
Hybridization protocol The Gene Chip Mouse Gene 1.1 ST Array Plate was hybridized in the Affymetrix Gene Titan Instrument standard procedure
Scan protocol The Gene Chip Mouse Gene 1.1 ST Array Plate was scanned in Affymetrix Gene Titan Instrument standard procedure
Data processing The data were analyzed with oilgo package (version 1.16.0) in Bioconductor. Transcripts level were summaried for core probesets using RMA.
Submission date Mar 14, 2012
Last update date Dec 01, 2012
Contact name Marko Matic
Organization name Karolinska Institutet
Street address Halsovägen 7
City Huddinge
ZIP/Postal code 14183
Country Sweden
Platform ID GPL11533
Series (1)
GSE36514 Estrogen signaling and the Metabolic Syndrome: Targeting the hepatic ERalpha action

Data table header descriptions
VALUE log2 RMA signal

Data table
10338001 11.21736121
10338002 3.902920358
10338003 9.446146251
10338004 8.830859887
10338005 1.847035143
10338006 2.059541401
10338007 2.33010087
10338008 2.524856882
10338009 5.847571844
10338010 1.878966383
10338011 3.401723724
10338012 1.992193974
10338013 1.645048795
10338014 1.756350057
10338015 1.679187233
10338016 4.659895664
10338017 12.60123665
10338018 4.322699839
10338019 3.095949517
10338020 5.626054003

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.

Supplementary file Size Download File type/resource
GSM896027_MM7_G05.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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