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Sample GSM891 Query DataSets for GSM891
Status Public on Feb 12, 2002
Title diauxic shift timecourse: 11.5 hr
Sample type RNA
 
Channel 1
Source name 0.14 OD 19.0g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 0.80 OD 17.6g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf3
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE28 Diauxic shift

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1448 1320 3572 4959 3911 1214 1048 989 3689 4678 0 0 .046 1.097 26 32 .913 .968 1.095 1.033 0 1230 80 16 26 55 65 .046
2 1353 1328 3924 4921 3857 1086 1064 1004 3638 4642 0 0 -.109 .997 28 35 1.017 1.079 .983 .927 0 1040 80 16 26 66 76 -.109
3 1393 1352 2361 3565 2477 1124 1088 1026 2337 3363 .961 0 -.015 1.065 26 28 .953 1.01 1.049 .99 .999 993 80 16 26 77 87 -.015
4 1433 1376 39 1133 21 1163 1112 1049 20 1069 .362 0 -.963 1.2 0 0 1.857 1.95 .538 .513 .369 1030 80 15 25 88 98 -.963
5 1526 1408 305 1323 163 1244 1160 1094 154 1248 .879 0 -.986 .628 12 6 1.871 1.981 .534 .505 .611 1026 80 15 25 99 109 -.986
6 1564 1424 509 1547 363 1278 1184 1117 342 1459 .97 0 -.574 .672 18 15 1.402 1.488 .713 .672 .796 1020 80 15 25 110 120 -.574
7 1572 1432 6634 11438 10254 1282 1184 1117 9674 10791 0 0 .544 1.115 52 42 .647 .686 1.546 1.458 0 1030 80 15 25 121 131 .544
8 1549 1424 1107 2336 1152 1265 1184 1117 1087 2204 .943 0 -.026 .917 20 25 .961 1.018 1.041 .982 .951 1020 80 15 25 132 142 -.026
9 1501 1424 153 1276 100 1229 1176 1109 95 1204 .583 0 -.688 .63 3 5 1.53 1.611 .654 .621 .483 1012 80 15 25 144 154 -.688
10 1510 1440 43 1196 4 1239 1192 1125 3 1128 .392 0 -3.841 .778 0 0 10.75 14.333 .093 .07 .311 1009 80 15 25 155 165 -3.841
11 1538 1464 124 1282 66 1274 1216 1147 62 1209 .554 0 -1 .756 0 0 1.879 2 .532 .5 .538 993 80 15 25 166 176 -1
12 1608 1528 125 1376 88 1351 1288 1215 83 1298 .486 0 -.591 1 0 1 1.42 1.506 .704 .664 .623 993 80 15 25 177 187 -.591
13 1669 1560 13883 19591 18271 1415 1320 1245 17237 18482 0 0 .312 1.285 56 58 .76 .805 1.316 1.242 0 993 80 15 25 188 198 .312
14 1712 1608 4928 7837 6477 1458 1360 1283 6110 7393 0 0 .31 1.167 43 58 .761 .807 1.314 1.24 0 993 80 15 25 199 209 .31
15 1750 1680 875 2188 796 1481 1392 1313 751 2064 .94 0 -.22 .925 35 35 1.099 1.165 .91 .858 .982 997 80 15 25 210 220 -.22
16 1741 1672 3414 5408 4056 1444 1352 1275 3827 5102 0 0 .165 1.147 37 48 .842 .892 1.188 1.121 0 1017 80 15 25 221 231 .165
17 1758 1688 3103 5113 3761 1438 1352 1275 3549 4824 0 0 .194 1.176 38 55 .825 .874 1.212 1.144 0 1017 80 15 25 232 242 .194
18 1748 1640 3076 6310 4974 1418 1336 1260 4693 5953 0 0 .609 1.433 68 67 .618 .655 1.617 1.526 0 1012 80 15 25 244 254 .609
19 1730 1616 2698 4155 2843 1398 1312 1238 2682 3920 .969 0 -.009 .921 36 38 .949 1.006 1.054 .994 1.059 1005 80 14 24 255 265 -.009
20 1728 1624 1109 2311 983 1398 1328 1253 927 2180 .927 0 -.259 .847 32 35 1.128 1.196 .886 .836 .893 989 80 14 24 266 276 -.259

Total number of rows: 6400

Table truncated, full table size 816 Kbytes.




Supplementary data files not provided
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