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Sample GSM889 Query DataSets for GSM889
Status Public on Feb 12, 2002
Title diauxic shift timecourse: 18.5 hr
Sample type RNA
 
Channel 1
Source name 0.14 OD 19.0g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 6.9 OD 0.2g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf6
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE28 Diauxic shift

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2575 2552 8750 9687 7183 2635 2504 2636 7561 10197 0 0 -.211 1 28 35 1.218 1.157 .821 .864 0 1230 80 36 46 58 68 -.211
2 2875 2656 8787 10150 7574 3011 2576 2712 7972 10684 0 0 -.14 .909 31 37 1.16 1.102 .862 .907 0 1044 80 36 46 69 79 -.14
3 2933 2704 4898 7638 5038 3058 2600 2737 5303 8040 0 0 .115 .998 27 30 .972 .924 1.029 1.083 0 1007 80 36 46 80 90 .115
4 2956 2728 2281 3049 2576 2712 2401 .162 0 .063 0 0 .107 1017 80 36 46 91 101
5 2929 2736 516 3005 429 2975 2576 2712 451 3163 .938 0 -.194 1.027 11 13 1.203 1.144 .831 .874 .965 1027 80 36 46 102 112 -.194
6 2763 2744 677 3363 803 2685 2560 2695 845 3540 .937 0 .32 .972 11 12 .843 .801 1.186 1.248 1.117 1053 80 36 46 113 123 .32
7 2753 2736 8289 10394 7826 2683 2568 2703 8238 10941 0 0 -.009 .923 33 36 1.059 1.006 .944 .994 0 1053 80 36 46 124 134 -.009
8 2726 2704 1269 4270 1678 2693 2592 2728 1767 4495 .946 0 .478 1.164 17 23 .756 .718 1.322 1.392 1.2 1048 80 36 46 136 146 .478
9 2761 2728 2356 2761 2648 2787 2480 .18 0 0 0 0 .145 1048 80 36 46 147 157
10 2794 2736 2340 2756 2640 2779 2463 .187 0 0 0 0 .136 1030 80 36 46 158 168
11 2842 2792 2360 2767 2664 2804 2484 .461 0 6.667 0 1 .995 1030 80 36 46 169 179
12 2883 2848 2317 2792 2704 2846 2439 .42 0 0 0 0 .275 1030 80 36 46 180 190
13 2932 2880 19937 10160 7392 2866 2768 2914 7781 10695 0 0 -1.357 .371 52 47 2.697 2.562 .371 .39 0 1030 80 36 46 191 201 -1.357
14 2956 2896 7548 9399 6527 3000 2872 3023 6871 9894 0 0 -.136 .904 37 41 1.156 1.099 .865 .91 0 1030 80 36 46 202 212 -.136
15 3017 2944 913 5850 2898 3107 2952 3107 3051 6158 .953 0 1.741 2.886 26 36 .315 .299 3.174 3.342 3.48 1040 80 36 46 213 223 1.741
16 3071 2984 5018 8252 5284 3130 2968 3124 5562 8686 0 0 .148 1.141 33 36 .95 .902 1.053 1.108 0 1053 80 36 46 224 234 .148
17 3129 3000 5680 10517 7565 3149 2952 3107 7964 11071 0 0 .488 1.515 32 41 .751 .713 1.332 1.402 0 1048 80 36 46 236 246 .488
18 3155 3032 2220 9115 6139 3156 2976 3133 6462 9595 0 0 1.541 2.716 37 41 .362 .344 2.765 2.911 0 1048 80 36 46 247 257 1.541
19 3091 2992 6618 9902 6926 3141 2976 3133 7290 10423 0 0 .14 1.109 32 37 .956 .908 1.047 1.102 0 1040 80 36 46 258 268 .14
20 3058 2960 3440 6515 3491 3201 3024 3183 3675 6858 0 0 .095 1.091 38 43 .985 .936 1.015 1.068 0 1030 80 36 46 269 279 .095

Total number of rows: 6400

Table truncated, full table size 821 Kbytes.




Supplementary data files not provided
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