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Sample GSM887 Query DataSets for GSM887
Status Public on Feb 12, 2002
Title diauxic shift timecourse: 15.5 hr
Sample type RNA
 
Channel 1
Source name 0.14 OD 19.0g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 3.7 OD 7.5g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf5
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE28 Diauxic shift

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2049 2008 8953 9529 8401 1157 1128 1327 9884 11211 0 0 .143 1.067 27 36 1.066 .906 .938 1.104 0 1230 80 36 46 85 95 .143
2 2075 2048 9944 10292 9132 1180 1160 1365 10743 12108 0 0 .111 .994 33 37 1.089 .926 .918 1.08 0 1044 80 36 46 96 106 .111
3 2080 2048 3581 4377 3201 1199 1176 1384 3765 5149 0 0 .072 .879 27 33 1.119 .951 .894 1.051 0 1017 80 36 46 107 117 .072
4 2080 2048 21 1180 4 1200 1176 1384 4 1388 .255 0 -2.392 .623 1 1 5.25 5.25 .19 .19 .209 1017 80 36 46 118 128 -2.392
5 2080 2048 223 1262 78 1204 1184 1393 92 1485 .457 0 -1.277 .503 8 5 2.859 2.424 .35 .413 .198 1012 80 36 46 130 140 -1.277
6 2074 2040 68 1244 76 1198 1168 1374 90 1464 .668 0 .404 .68 5 7 .895 .756 1.118 1.324 .503 1009 80 36 46 141 151 .404
7 2080 2040 13007 8161 7001 1207 1160 1365 8236 9601 0 0 -.659 .564 37 41 1.858 1.579 .538 .633 0 993 80 36 46 152 162 -.659
8 2093 2040 1297 2090 930 1212 1160 1365 1094 2459 .956 0 -.246 .748 23 28 1.395 1.186 .717 .843 .712 993 80 36 46 163 173 -.246
9 2089 2000 54 1127 1214 1160 1365 1326 -.129 0 .436 3 2 -.07 993 80 36 46 174 184
10 2109 2008 78 1201 49 1221 1152 1355 58 1413 .215 0 -.427 .861 5 2 1.592 1.345 .628 .744 .085 993 80 36 46 185 195 -.427
11 2154 2040 535 1405 237 1236 1168 1374 279 1653 .678 0 -.939 .681 21 15 2.257 1.918 .443 .521 .305 1017 80 36 46 196 206 -.939
12 2215 2056 173 1307 123 1302 1184 1393 145 1538 .746 0 -.255 .778 3 5 1.407 1.193 .711 .838 .345 1017 80 36 46 207 217 -.255
13 2223 2080 15432 14300 13092 1311 1208 1421 15403 16824 0 0 -.003 .8 47 52 1.179 1.002 .848 .998 0 1012 80 36 46 219 229 -.003
14 2182 2056 5095 7149 5949 1304 1200 1412 6999 8411 0 0 .458 1.14 37 48 .856 .728 1.168 1.374 0 1012 80 36 46 230 240 .458
15 2094 2040 1071 1985 785 1245 1200 1412 923 2335 .887 0 -.215 .755 37 35 1.364 1.16 .733 .862 .739 993 80 36 46 241 251 -.215
16 2055 2032 1824 2788 1588 1217 1200 1412 1868 3280 .977 0 .034 .957 30 36 1.149 .976 .871 1.024 .942 993 80 36 46 252 262 .034
17 2049 2032 2317 3561 2377 1207 1184 1393 2796 4189 .973 0 .271 .985 32 40 .975 .829 1.026 1.207 .988 993 80 36 46 263 273 .271
18 2029 2024 3071 4758 3558 1214 1200 1412 4186 5598 .954 0 .447 1.097 41 47 .863 .734 1.159 1.363 1.13 993 80 36 46 274 284 .447
19 2028 2016 1308 2311 1111 1217 1200 1412 1307 2719 .877 0 -.001 .857 30 36 1.177 1.001 .849 .999 .696 997 80 36 46 285 295 -.001
20 2059 2032 569 1430 214 1242 1216 1431 251 1682 .741 0 -1.181 .531 22 17 2.659 2.267 .376 .441 .402 1017 80 36 46 296 306 -1.181

Total number of rows: 6400

Table truncated, full table size 818 Kbytes.




Supplementary data files not provided
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