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Sample GSM885 Query DataSets for GSM885
Status Public on Feb 12, 2002
Title DBY7286 Low-Pi vs. High-Pi
Sample type RNA
 
Channel 1
Source name Cy3-labeled cDNA from DBY7286 mRNA in YPAD+Pi
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Cy5-labeled cDNA from DBY7286 mRNA in YPAD-Pi
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description DBY7286 (MATa ura3-52), a derivative from S288C. YPAD-Pi is a phosphate-depleted YPAD medium (~0.15 mM Pi). YPAD+Pi was made by addition of 10 mM Pi (final) to YPAD-Pi. RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = dby
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL66
Series (1)
GSE20 Manipulation in phospate levels

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2056 1624 517 1883 803 1470 1080 1009 751 1760 .935 0 .539 1.387 28 31 .644 .688 1.553 1.453 1.381 1451 32 29 35 110 116 .539
2 2127 1656 6826 8917 7821 1520 1096 1024 7310 8334 .955 0 .099 1.071 87 93 .873 .934 1.146 1.071 1.26 1371 32 29 35 120 126 .099
3 2149 1672 4398 6274 5170 1541 1104 1032 4832 5864 .976 0 .136 1.135 50 56 .851 .91 1.176 1.099 1.175 1349 32 29 35 130 136 .136
4 1981 1664 3384 5513 4409 1429 1104 1032 4120 5152 .969 0 .284 1.379 43 50 .768 .821 1.303 1.217 1.326 1349 32 29 35 140 146 .284
5 1690 1616 3534 5401 4313 1173 1088 1017 4031 5048 .954 0 .19 1.207 43 50 .819 .877 1.22 1.141 1.143 1349 32 29 35 150 156 .19
6 1661 1608 4631 6784 5696 1160 1088 1017 5323 6340 .98 0 .201 1.243 50 53 .813 .87 1.23 1.149 1.179 1349 32 29 35 160 166 .201
7 1668 1608 4614 6189 5101 1163 1088 1017 4767 5784 .988 0 .047 1.072 46 50 .905 .968 1.106 1.033 1.068 1349 32 29 35 170 176 .047
8 1636 1608 4488 6459 5379 1095 1080 1009 5027 6036 .971 0 .164 1.299 40 46 .834 .893 1.199 1.12 1.046 1339 32 29 35 180 186 .164
9 1651 1624 4731 6796 5716 1096 1080 1009 5342 6351 .985 0 .175 1.176 40 53 .828 .886 1.208 1.129 1.136 1339 32 29 35 190 196 .175
10 1656 1624 1012 1097 1080 1009 946 .375 0 .645 0 0 .33 1305 32 30 36 197 203
11 1652 1632 1066 1087 1072 1002 996 .005 0 1.333 0 0 .005 1305 32 30 36 207 213
12 1670 1640 996 1085 1072 1002 931 -.009 0 2.222 0 0 -.011 1321 32 30 36 217 223
13 1805 1648 118 1145 89 1080 1056 987 83 1070 .883 0 -.508 .384 6 6 1.326 1.422 .754 .703 .5 1311 32 30 36 227 233 -.508
14 1810 1648 2697 1122 58 1088 1064 994 55 1049 .906 0 -5.616 .368 28 6 46.5 49.036 .022 .02 .05 1321 32 30 36 237 243 -5.616
15 1829 1664 81 1088 32 1086 1056 987 30 1017 .726 0 -1.433 .568 6 3 2.531 2.7 .395 .37 .345 1321 32 30 36 247 253 -1.433
16 1836 1672 1835 3015 1959 1082 1056 987 1831 2818 .988 0 -.003 1.019 43 46 .937 1.002 1.068 .998 1.154 1321 32 30 36 257 263 -.003
17 1709 1680 1052 1075 1056 987 983 -.126 0 .75 0 0 -.094 1331 32 30 36 267 273
18 1724 1696 1031 1059 1048 979 964 .28 0 .556 0 0 .156 1321 32 30 36 277 283
19 1713 1696 1063 23 1054 1040 972 21 993 -.003 0 1 0 0 -.002 1321 32 30 36 287 293
20 1694 1672 982 1051 1040 972 918 .299 0 .909 0 0 .207 1321 32 30 36 297 303

Total number of rows: 6528

Table truncated, full table size 827 Kbytes.




Supplementary data files not provided
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