NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM880771 Query DataSets for GSM880771
Status Public on Feb 24, 2013
Title PT12 tamoxifen treated, replicate 1
Sample type RNA
 
Source name Tumor
Organism Homo sapiens
Characteristics xenograft: PT12
treatment: tamoxifen treated
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 500ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 3.5 ug of cDNA were hybridized for 20 hr at 48C on HuGene 1.1ST Array strip. GeneStrips were washed and stained in the Affymetrix Gene Atlas fluidics station.
Scan protocol GeneStrips were scanned using the Gene Atlas imaging station.
Description Human breast cancer was xenografted in NOD/SCID mice
Data processing The data were analyzed with Partek using RMA as normalization method.
 
Submission date Feb 24, 2012
Last update date Feb 24, 2013
Contact name peter kabos
E-mail(s) peter.kabos@ucdenver.edu
Organization name University of Colorado Denver
Department Medicine
Street address 12801 E. 17th Avenue
City Aurora
ZIP/Postal code 80045
Country USA
 
Platform ID GPL11532
Series (1)
GSE36075 Estrogen receptor dynamics in diverse patient-derived luminal breast cancer xenografts

Data table header descriptions
ID_REF
VALUE RMA values

Data table
ID_REF VALUE
7892501 2.39855
7892502 3.98212
7892503 2.22626
7892504 6.50599
7892505 2.40593
7892506 2.95074
7892507 3.88423
7892508 4.99849
7892509 8.80154
7892510 3.34487
7892511 2.4632
7892512 6.19279
7892513 2.77759
7892514 10.7582
7892515 7.40981
7892516 4.16467
7892517 6.39495
7892518 2.47824
7892519 4.93655
7892520 8.07108

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM880771_89-9_LT.ga.cel.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap