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Sample GSM880766 Query DataSets for GSM880766
Status Public on Feb 24, 2013
Title PT12 estrogen treated, replicate 3
Sample type RNA
 
Source name Tumor
Organism Homo sapiens
Characteristics xenograft: PT12
treatment: estrogen treated
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 500ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 3.5 ug of cDNA were hybridized for 20 hr at 48C on HuGene 1.1ST Array strip. GeneStrips were washed and stained in the Affymetrix Gene Atlas fluidics station.
Scan protocol GeneStrips were scanned using the Gene Atlas imaging station.
Description Human breast cancer was xenografted in NOD/SCID mice
Data processing The data were analyzed with Partek using RMA as normalization method.
 
Submission date Feb 24, 2012
Last update date Feb 24, 2013
Contact name peter kabos
E-mail(s) peter.kabos@ucdenver.edu
Organization name University of Colorado Denver
Department Medicine
Street address 12801 E. 17th Avenue
City Aurora
ZIP/Postal code 80045
Country USA
 
Platform ID GPL11532
Series (1)
GSE36075 Estrogen receptor dynamics in diverse patient-derived luminal breast cancer xenografts

Data table header descriptions
ID_REF
VALUE RMA values

Data table
ID_REF VALUE
7892501 3.52012
7892502 4.37823
7892503 2.54524
7892504 6.84201
7892505 2.06576
7892506 3.67363
7892507 3.92253
7892508 4.75842
7892509 9.29912
7892510 3.49776
7892511 2.42296
7892512 6.71907
7892513 3.62296
7892514 11.2073
7892515 7.1225
7892516 5.20774
7892517 6.07425
7892518 2.49355
7892519 4.88494
7892520 8.23572

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM880766_98-4_RT.ga.cel.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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